Enable permission warnings from ManifestHandlers.

chrome/browser/extensions/active_tab_permission_granter.cc

 // Copyright (c) 2012 The Chromium Authors. All rights reserved.
 // Use of this source code is governed by a BSD-style license that can be
 // found in the LICENSE file.
 
 #include "chrome/browser/extensions/active_tab_permission_granter.h"
 
 #include "chrome/browser/chrome_notification_types.h"
 #include "chrome/browser/extensions/extension_service.h"
 #include "chrome/browser/extensions/extension_system.h"
 #include "chrome/browser/profiles/profile.h"
@@ skipping 41 matching lines @@
     }
     new_apis.insert(APIPermission::kTab);
   }
 
   if (extension->HasAPIPermission(APIPermission::kTabCapture))
     new_apis.insert(APIPermission::kTabCaptureForTab);
 
   if (!new_apis.empty() || !new_hosts.is_empty()) {
     granted_extensions_.Insert(extension);
     scoped_refptr<const PermissionSet> new_permissions =
-        new PermissionSet(new_apis, new_hosts, URLPatternSet());
+        new PermissionSet(new_apis, ManifestPermissionSet(),
+                          new_hosts, URLPatternSet());
     PermissionsData::UpdateTabSpecificPermissions(extension,
                                                   tab_id_,
                                                   new_permissions);
     const content::NavigationEntry* navigation_entry =
         web_contents()->GetController().GetVisibleEntry();
     if (navigation_entry) {
       Send(new ExtensionMsg_UpdateTabSpecificPermissions(
           navigation_entry->GetPageID(),
           tab_id_,
           extension->id(),
@@ skipping 38 matching lines @@
        it != granted_extensions_.end(); ++it) {
     PermissionsData::ClearTabSpecificPermissions(it->get(), tab_id_);
     extension_ids.push_back((*it)->id());
   }
 
   Send(new ExtensionMsg_ClearTabSpecificPermissions(tab_id_, extension_ids));
   granted_extensions_.Clear();
 }
 
 }  // namespace extensions